Fall04: CSE290: Seminar in Computational Biology

Instructor: Vineet Bafna

Instructions

  • Think about what you want to present, and why you want to present it?
  • Send me an abstract the Friday before you speak, and presentation Monday.
  • The first 2-3 slides should have a discussion on the general topic, why you selected the paper, and some ideas on how one might extend it.
  • If the topic is esoteric, prepare some background material.

    • Lectures: M 2:00-3:20pm. APM 4218

    Lecture Title Speaker Presentation Abstract
    10/4 Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements Genome Research 2004 (pdf) Mark Chaisson abstract
    10/11 Protein Structure as a Graph Adam Godzik abstract
    10/18 Widespread RNA Editing of Embedded Alu Elements in the Human Transcriptome" Genome Res. 2004 14: 1719-1725. Shaojie Zhang
    10/25 Proteogenomic mapping as a complementary method to perform genome annotation. Proteomics. 2004 Jan ; 4(1): 59-77 Nuno Bandeira
    11/1 Mass Spctrometry Nuno Bandeira
    11/8 CisModules: de novo discovery of cis-regulatory modules by hierarchical mixture modeling Neil Jones
    11/8 Vikas Bansal
    11/15 Qian Peng
    11/22 Max Alekseyev
    11/29

    Winter 2005
    Lecture Title Speaker Presentation Abstract
    1/2005 Ari Frank