Instructor: Vineet Bafna
Lectures: MW, 5:00PM--6:20PM, CENTR207. First class is 9/29/03.
Meetings:
Please send e-mail to
vbafna@cs.ucsd.edu
Mailing List
Add yourself to the mailing list cse291-a@cs.ucsd.edu. To get
instructions, send a message with just the word `help' as subject or
in the body, to: cse291-a-request@cs.ucsd.edu
Course Information:
See the Course Information Sheet:
postscript ; pdf
Projects
Postscript ;
PDF ;
Lectures
Future recommended reading is subject to change
with little notice. Please note that the available manuscripts are
copyright protected, and may be used only for educational purposes. The notes
presented here are unedited, and may contain errors.
| Week | Topic | Slides | Scribes | Suggested Reading (PDF gzipped) |
|---|---|---|---|---|
| 9/29/2003 | Outline RNA structure | L1 , L2 Lecture Notes | Nuno
Bandeira, Vikas Bansal | Rivas & Eddy MWM |
| 10/6/2003 | RNA structure/pseudo-knots Comparative Genomics & nc Genes | L3 slides L3,4 Notes | Kostas Bimpikis Jeremy Chiu | Rivas Eddy (Bioinformatics 2000) QRNA |
| 10/13/2003 | SCFGs, comparative nc_gene finding | L5 slides L6 slides L5 notes L6 notes | Ali Bashir Christine Cheng | MiRscan1 MiRscan2 Computing Similarity in RNA strings, LNCS Vol. 937, pp 1-16, 1995 |
10/20/2003 | Population Genetics basics, Coalescent theory, Ancestral Recombination Graphs | Lec 7 slides L8 slides | Heasoo Hwang Brian Haas | "Coalescent Theory" M. Nordborg in Handbook of Statistical Genetics, 2001 John Wiley & Sons Nordborg & Tavare (Trends in Genetics) Reich et al. |
| 10/27 | No Class | |||
| 11/3/2003 | Hyunmin Kang Sean M O'Rourke | |||
| 11/10/2003 | Qian Peng Chun Ye | |||
| 11/17/2003 | Noah Zaitlen Shaojie Zhang | |||
| 11/24/2003 | ||||
| 12/1/2003 |
Research:
If you are interested in exploring research
opportunities in Computational Biology, please get in touch with me.