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Recent publications

1. Multi-Spectra Peptide Sequencing and its Applications to Multistage Mass Spectrometry
   Nuno Bandeira, Jesper Olsen, Matthias Mann, Pavel Pevzner
   ISMB 2008 (in press)
   
   
2. De Novo Sequencing of Nonribosomal Peptides
   Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger Linington, Pieter Dorrestein, Pavel Pevzner
   RECOMB 2008, 12th Annual International Conference on Research in Computational Molecular Biology.
   
   
3. Clustering millions of tandem mass spectra
   Ari Frank, Nuno Bandeira, Zhouxin Shen, Stephen Tanner, Steven Briggs, Richard Smith, Pavel Pevzner
   J Proteome Res. Jan;7(1):113-22. Epub 2007 Dec 8., PMID: 18067247
   
   
4. Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications
   Nuno Bandeira
   Biotechniques, 2007 Jun;42(6):687, PMID: 17612289
   
   
5. Shotgun Protein Sequencing: Assembly of MS/MS Mass Spectra from Mixtures of Modified Proteins
   Nuno Bandeira, Karl Clauser, Pavel Pevzner
   Molecular and Cellular Proteomics, 2007 Jul;6(7):1123-34. Epub 2007 Apr 19
   (online version) PMID: 17446555
   
   
6. Protein identification by spectral networks analysis
   Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel Pevzner
   Proceedings of the National Academy of Sciences (PNAS), 2007 Apr 10;104(15):6140-5
   (online version) PMID: 17404225
   
   
7. A new approach to protein identification
   Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel Pevzner
   RECOMB 2006, 10th Annual International Conference on Research in Computational Molecular Biology.
   
   
8. Shotgun Protein Sequencing by Tandem Mass Spectra Assembly
   Nuno Bandeira, Haixu Tang, Vineet Bafna, Pavel Pevzner
   Analytical Chemistry, 76:7221-7233, 2004.
   PMID: 15595863

Previous publications

1. Analysis of EEG of shooters
   Nuno Bandeira, Vitor Sousa Lobo, Fernando Moura-Pires
   Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences METMBS'2000, 2000.
   
   
2. EEG/ECG data fusion using Self-Organising Maps
   Nuno Filipe Cabrita Bandeira, Vitor Sousa Lobo, Fernando Moura-Pires
   Proceedings of EuroFusion99, International Conference on Data Fusion,
   1999, Joliver Press, ISBN: 0-95337132-0-2
   IEE/ISIF, Startford-upon-Avon, UK
   
   
3. Training a Self-Organizing Map distributed on a PVM network
   Nuno Filipe Cabrita Bandeira, Vitor Sousa Lobo, Fernando Moura-Pires
   Proceedings of the International Joint Conference on Neural Networks (IJCNN98 / WCCI98)
   IEEE, Alaska, USA
   
   
4. Distributed Kohonen Networks for Passive Sonar Based Classification
   Vitor Sousa Lobo, Nuno Filipe Cabrita Bandeira, Fernando Moura-Pires
   Proceedings of the 1998 International Conference on Multisource-Multisensor Information Fusion (FUSION98),
   Las Vegas, USA
   
   
5. Ship recognition using Distributed Self Organizing Maps
   Vitor Sousa Lobo, Nuno Filipe Cabrita Bandeira, Fernando Moura-Pires
   Proceedings of the 1998 International Conference on Engineering Applications of Neural Networks (EANN98),
   Gibraltar